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Blender
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Move, Rotate, Scale
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Select the atoms, and press the transform Shortcut, and move your mouse

- ``g``, move
- ``r``, rotate
- ``s``, scale

You can also try:

- ``g``, then ``x``, move along X-axis.

- ``g``, then ``x``, then ``2``, move along X-axis by 2.



- move whole project (atoms, bonds, cell, ...)
- move atoms, in Edit mode