Beautiful Atoms

Getting Started

  • About Beautiful Atoms
  • Installation
  • Update
  • GUI example
  • Python example

Sections

  • User interface
  • Modeling
  • Animation
  • Rendering
  • Python
  • Tutorials
    • Building structure
    • Bond and Polyhedra
    • Select
    • Volumetric data and isosurface
    • Lattice Plane and Crystal shape
    • Boundary mode
    • Periodic boundary conditions
    • Optimization
    • Color setting
    • Label setting
    • Species
    • Highlight atoms
    • How to set the camera to focus on specific atoms?
    • Hide atoms
    • Occupancy
    • Ribbon diagram
    • Molecular surface
    • Electrostatic potential maps
    • Metaball
    • Build structure for surface
    • The render function
    • How to load Batoms from a collection?
    • Blender
    • Export
    • Export 3D mesh
    • Thrid-party
    • Copy
  • Advanced topics
  • Gallery
  • Operators
  • Tips
  • Contact
  • FAQs
  • Development
Beautiful Atoms
  • Tutorials
  • View page source

Tutorials

  • Building structure
    • From scratch
    • Import from file
    • ASE
    • Molecules
    • Crystal
    • Surface
    • Nanoparticle
  • Bond and Polyhedra
    • Search bond mode
    • Hydrogen bond
    • High order bond
  • Select
    • Creating a select
    • Select Panel Controls
  • Volumetric data and isosurface
    • Cube file
    • CHGCAR
    • 2D slicing
  • Lattice Plane and Crystal shape
    • Lattice Plane
    • Crystal shape
  • Boundary mode
  • Periodic boundary conditions
  • Optimization
  • Color setting
    • Batom and Batoms
    • Color by attributes
    • Bond
    • Polyhedra
  • Label setting
  • Species
    • Color
    • Polyhedra with different species
    • Auto build species based on equivalent_atoms
  • Highlight atoms
    • GUI
  • How to set the camera to focus on specific atoms?
    • GUI
  • Hide atoms
    • GUI
  • Occupancy
  • Ribbon diagram
    • Import a PDB file
    • Draw ribbon diagram
    • Selections
  • Molecular surface
    • Solvent accessible surface
    • Solvent-excluded surface
    • Real-time rendering of SAS
  • Electrostatic potential maps
    • Quantum chemical methods
    • Classic method
  • Metaball
  • Build structure for surface
    • Surface adsorption
    • Create and visualize vacancy site on surface
  • The render function
  • How to load Batoms from a collection?
  • Blender
    • Move, Rotate, Scale
  • Export
  • Export 3D mesh
    • X3D format
    • OBJ format
    • FBX format
  • Thrid-party
    • ASE
    • Pymatgen
  • Copy
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